Author

Alexandre Denadai‐Souza

KU LeuvenORCID 0000-0003-0385-1321Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Guy E. BoeckxstaensiD· 2 shared Abdalla AhmediD· 1 shared Adrian ListoniD· 1 shared Adrienne LuomaiD· 1 shared Agne AntanaviciuteiD· 1 shared Albert BurgeriD· 1 shared Aleksandra Jurek· 1 shared Alexander DumareyiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersSystems Biology

Guy E. BoeckxstaensORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

ImmunologybioRxivPreprintOct 14, 2026

Cirrhosis-associated immune dysfunction reflects impaired intestinal CD8ab⁺ intraepithelial lymphocyte compartmentalization

Cansu Akkaya, Matthias van Sligtenhorst, Sadia Shaukat…·Alexandre Denadai‐Souza

The paper investigates immune dysfunction in cirrhosis by analyzing CD8ab⁺ intraepithelial lymphocytes and identifies CCL25-CCR9 axis disruption as a key factor.

DOI 10.64898/2026.03.26.713594

humanbulk RNA-seq

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Systems BiologybioRxivPreprintOct 12, 2026

The Human Gut Cell Atlas v1.0: A Unified, Community-Built Reference of Cellular Diversity Across the Gut

Kyle Kimler, Christopher Lance, Balázs Bohár…·Kathryn E. Hamilton

The paper presents the Human Gut Cell Atlas v1.0, a unified reference of gut cell diversity, revealing how tissue structure influences cellular composition and enabling disease and organoid analysis.

DOI 10.64898/2026.10.09.753994

humanscRNA-seq

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GenomicsNature CommunicationsPeer-reviewedJan 31, 2023

Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples

Reza Mirzazadeh, Žaneta Andrusivová, Ludvig Larsson…·Joakim Lundeberg

The paper introduces RRST, a spatial transcriptomics workflow that improves mRNA recovery from low-quality fresh frozen samples, demonstrating its effectiveness across multiple tissue types.

65 citationstop 2%

humanmouse

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