Author

Mingyuan Xu

Guangzhou LaboratoryORCID 0000-0003-0463-4249Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Mingyuan Xu1 paper · Hunan University of Science and Technology

Biology Disciplines

Click to filter author papers

Biochemistry· 1 Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Research Focus:drug response / drug discovery· 1 Research Focus:protein design· 1 Assay:protein structure· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Jinping LeiiD· 2 shared Qirui DengiD· 2 shared Anjie QiaoiD· 1 shared Chang‐Yu HsiehiD· 1 shared Chaoming Huang· 1 shared Chen Hong-mingiD· 1 shared Hao ZhangiD· 1 shared Hongming CheniD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBiochemistry

Jinping LeiORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BiochemistrybioRxivPreprintOct 11, 2026

PeTFlow: Flow-Matching Based All-Atom Peptide Design through Side-Chain State Tokenization

Qirui Deng, Mingyuan Xu, Chen Hong-ming, Jinping Lei

PeTFlow designs peptides by optimizing sequence, conformation, and side-chain packing using flow-matching and state tokenization, achieving high-quality results on benchmarks.

DOI 10.64898/2026.10.09.757799

protein structuredeep learning

𝕏 PostBluesky

BioinformaticsJACS AuPeer-reviewedJul 7, 2026

SynPROTAC: synthesizable PROTACs design through synthesis constrained generative model and reinforcement learning

Mingyuan Xu, Chaoming Huang, Li Pang…·Jinping Lei

SynPROTAC generates novel PROTAC molecules with feasible synthetic routes and favorable properties using a synthesis-constrained generative model and reinforcement learning.

DOI 10.1021/jacsau.6c00732

deep learningtransformer / foundation model

𝕏 PostBluesky