Author

Nicola Zilio

Institute of Molecular BiologyORCID 0000-0003-0588-3917Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Helle D. UlrichiD· 2 shared Dmitri IvanoviD· 1 shared Dominik StrohiD· 1 shared Emma DillieriD· 1 shared Hobin Yu· 1 shared Kathi ZarnackiD· 1 shared Kook SoniD· 1 shared M. Cristina CardosoiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Helle D. UlrichORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 14, 2026

RepliCNN: High-resolution inference of the DNA replication program from strand-specific 3' DNA end sequencing

Dominik Stroh, Nicola Zilio, Maruthi Kumar Pabba…·Kathi Zarnack

RepliCNN predicts DNA replication timing and related features from strand-specific 3' DNA end sequencing data with high accuracy.

DOI 10.64898/2026.03.12.710907

𝕏 PostBluesky

Molecular BiologyNature CommunicationsPeer-reviewedFeb 15, 2024

Trabectedin derails transcription-coupled nucleotide excision repair to induce DNA breaks in highly transcribed genes

Kook Son, Vakil Takhaveev, Visesato Mor…·Orlando D. Schärer

31 citationstop 4%

humanDNA methylation

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