Yanay Rosen

This study identifies conserved and clade-specific hypothalamic cell types across vertebrates using single-cell transcriptomics, revealing conserved transcription factors and rewired regulatory linkages.

PULSAR is a foundation model that integrates multi-scale biological data to predict disease and clinical outcomes in the human immune system.

SATURN integrates single-cell RNA-seq datasets across species using deep learning to create universal cell embeddings, enabling cross-species analysis and annotation transfer.

PhyloVision is an open-source software tool that integrates single-cell transcriptomic and phylogenetic data to identify heritable gene modules associated with lineage relationships.

Cumulus is a cloud-based framework for analyzing large-scale sc/snRNA-seq data, improving efficiency and scalability while maintaining result quality.

The paper develops a toolbox for scRNA-Seq and snRNA-Seq of fresh and frozen human tumors, testing it across eight tumor types and optimizing protocols for different tissue characteristics.