Author

Nicolai Apenes

University of PennsylvaniaORCID 0000-0003-1134-1890Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:C. elegans· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Andrew MooreiD· 1 shared Arin CoxiD· 1 shared Charles‐Antoine AssenmacheriD· 1 shared Daniel SorobeteaiD· 1 shared David C KingiD· 1 shared E. MineriD· 1 shared Erin Osborne NishimuraiD· 1 shared Gabriela RamíreziD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Andrew MooreORCID

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2 papers

Recent·Most cited

MicrobiologymBioPeer-reviewedSep 9, 2025

TNF signaling maintains local restriction of bacterial founder populations in intestinal and systemic sites during oral Yersinia infection

Stefan T. Peterson, Katherine G. Dailey, Karthik Hullahalli…·Igor E. Brodsky

This study shows that small bacterial founder populations independently colonize intestinal and systemic tissues during Yersinia infection, with TNF signaling restricting dissemination.

9 citationstop 3%

mousebulk RNA-seq

𝕏 PostBluesky

GenomicsGeneticsPeer-reviewedMay 15, 2023

Transcriptome profiling of the Caenorhabditis elegans intestine reveals that ELT-2 negatively and positively regulates intestinal gene expression within the context of a gene regulatory network

Robert T. P. Williams, David C King, Izabella R. Mastroianni…·Erin Osborne Nishimura

The paper identifies ELT-2's role in regulating intestinal gene expression in C. elegans by analyzing transcriptome profiles across developmental stages and reveals its dual activation and repression of target genes.

6 citations

C. elegansbulk RNA-seq

𝕏 PostBluesky