Author

Annika Carlson

University of California, BerkeleyORCID 0000-0003-1222-8689Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Neuroscience· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:genome assembly· 1 Organism:human· 1

Frequent Co-Authors

Bjoern SchweriD· 2 shared Adam P. ArkiniD· 1 shared Ashlie Barillas· 1 shared Berling Chen· 1 shared Gaëlle LegubeiD· 1 shared Jamie H. D. CateiD· 1 shared Jeffrey M. SkerkeriD· 1 shared John William TayloriD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersNeuroscience

Bjoern SchwerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

NeurosciencebioRxivPreprintOct 22, 2024

Endogenous neuronal DNA double-strand breaks are not sufficient to drive brain aging and neurodegeneration

Sarah Cohen, Laura Cheradame, Karishma J. B. Pratt…·Bjoern Schwer

This study shows that neuronal DNA double-strand breaks, even when accumulated due to loss of C-NHEJ, do not drive brain aging or neurodegeneration in mice.

1 citation

mouseDNA methylation

𝕏 PostBluesky

NeurosciencebioRxivPreprintSep 20, 2021

Genome-wide mapping implicates R-loops in lineage-specific processes and formation of DNA break hotspots in neural stem/progenitor cells

Supawat Thongthip, Annika Carlson, Magdalena P. Crossley, Bjoern Schwer

The paper maps R-loops in neural stem/progenitor cells and finds they are associated with early replicating, transcribed regions but not with recurrent DSB clusters in long genes.

DOI 10.1101/2021.09.20.460546

humanDNA methylation

𝕏 PostBluesky

Synthetic BiologymBioPeer-reviewedSep 24, 2018

Kluyveromyces marxianus as a robust synthetic biology platform host

Paul Cernak, Raíssa Estrela, Snigdha Poddar…·Jamie H. D. Cate

This paper engineers Kluyveromyces marxianus to create a synthetic biology platform with enhanced traits for industrial applications.

90 citations

yeastexperimental assay

𝕏 PostBluesky