Author

Jake A. Melby

University of Wisconsin–MadisonORCID 0000-0003-1499-9508Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Ying GeiD· 3 shared David S. RobertsiD· 2 shared Kalina J. RossleriD· 2 shared Kyle A. BrowniD· 2 shared Timothy J. AballoiD· 2 shared Boris KricheliD· 1 shared Bridget Knight· 1 shared Eli J. LarsoniD· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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3 shared papersBioinformatics

Ying GeORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJun 1, 2023

MASH Native: A Unified Solution for Native Top-Down Proteomics Data Processing

Eli J. Larson, Melissa R. Pergande, Michelle E. Moss…·Ying Ge

MASH Native provides a unified software solution for processing native top-down proteomics data, offering database searching and analysis tools in a user-friendly interface.

39 citationstop 5%

proteomicsstatistical model

𝕏 PostBluesky

Molecular BiologybioRxivPreprintMay 5, 2023

Lactate and Immunomagnetic-purified iPSC-derived Cardiomyocytes Generate Comparable Engineered Cardiac Tissue Constructs

Kalina J. Rossler, Willem J. de Lange, Morgan W. Mann…·Ying Ge

This study compares the functional and molecular properties of engineered cardiac tissue constructs made from hiPSC-CMs purified by lactate or MACS methods, finding no significant differences.

DOI 10.1101/2023.05.05.539642

humanbulk RNA-seq

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Systems BiologyJournal of Proteome ResearchPeer-reviewedJul 8, 2021

Ultrafast and Reproducible Proteomics from Small Amounts of Heart Tissue Enabled by Azo and timsTOF Pro

Timothy J. Aballo, David S. Roberts, Jake A. Melby…·Ying Ge

The paper introduces an ultrafast proteomics method using Azo and timsTOF Pro to enable high-throughput, reproducible protein identification and quantification from small amounts of human heart tissue.

55 citationstop 4%

humanproteomics

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