Sontosh K. Deb

HyARQ is a Snakemake workflow for allele-specific read counting and quality control across multiple assays in F1 hybrids, showing accurate recovery of parental proportions.

The paper sequenced genomes of Poaceae sister species to identify metabolic innovations that predate grass evolution, revealing gene duplications linked to starch and lignin biosynthesis.

MosaicSim simulates mosaic variants in sequencing data to evaluate detection methods, showing that higher coverage improves detection rates without false positives.