Author

James Chaffer

Stanford UniversityORCID 0000-0003-1653-8449Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 1 Organism:Drosophila· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Amanda M. LarracuenteiD· 1 shared Beatriz M. Navarro-DomíngueziD· 1 shared Brian D. AevermanniD· 1 shared Brian Mott· 1 shared Cécile CourretiD· 1 shared Corinn SmalliD· 1 shared Eddyson Altidor· 1 shared Erica M. RutherfordiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Amanda M. LarracuenteORCID

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2 papers

Recent·Most cited

GeneticsbioRxivPreprintAug 4, 2026

A collaborative submission model for building high-quality data resources at scale through partnership: lessons from single-cell genomics

Jason A. Hilton, Jim Chaffer, Jenny Chien…·Teri E. Klein

The paper describes a collaborative submission model for building high-quality single-cell genomics data resources, emphasizing partnership between contributors and curators to improve metadata quality and resource scalability.

1 citation

scRNA-seqexperimental assay

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 25, 2022

Centromere-associated retroelement evolution in Drosophila melanogaster reveals an underlying conflict

Lucas W. Hemmer, Sherif Negm, Xuewen Geng…·Amanda M. Larracuente

The paper studies the evolution of G2/Jockey-3, a retroelement associated with centromeres in Drosophila melanogaster, finding it is likely a selfish element that targets centromeres to evade host defenses.

4 citations

Drosophilawhole-genome sequencing

𝕏 PostBluesky