Author

Ali Khoshouei

Heinrich Heine University DüsseldorfORCID 0000-0003-1735-8423Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Approach:deep learning· 1 Organism:E. coli· 1 Organism:fungi (other)· 1 Research Focus:protein design· 1 Assay:protein structure· 1 Organism:Xenopus· 1

Frequent Co-Authors

Anna MatuszyńskaiD· 1 shared Christopher FrankiD· 1 shared Daniela Vidaurre‐BarahonaiD· 1 shared Dominik Schiewitz· 1 shared Edna BodeiD· 1 shared Florian AltegoeriD· 1 shared Heba YehiaiD· 1 shared Helge B. BodeiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperMicrobiology

Anna MatuszyńskaORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 19, 2026

Disentangling the sucrose metabolism of the corn smut Ustilago maydis reveals unexpected complexity

Tom Berwanger, Ali Khoshouei, Heba Yehia…·Kerstin Schipper

This study identifies the sucrose metabolism pathways in Ustilago maydis, revealing alternative strategies for carbon acquisition during different growth stages.

DOI 10.64898/2026.06.11.731450

fungi (other)experimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintJun 16, 2026

Acyl amides derived from a bacterial symbiont control development of its nematode host

Ли Су, Daniela Vidaurre‐Barahona, Michelle Anne Diano…·Helge B. Bode

The paper identifies bacterial acyl amides, called stripteamides, as signals controlling nematode development in the Steinernema-Xenorhabdus symbiosis.

DOI 10.64898/2026.06.15.732422

Xenopusexperimental assay

𝕏 PostBluesky

Synthetic BiologybioRxivPreprintFeb 24, 2023

Efficient and scalable de novo protein design using a relaxed sequence space

Christopher Frank, Ali Khoshouei, Yosta de Stigter…·Hendrik Dietz

This paper introduces a method for efficient de novo protein design using a relaxed sequence space approach, demonstrating successful experimental production of over 50 proteins with desired structural properties.

26 citations

E. coliprotein structure

𝕏 PostBluesky