Valerie Wood

GOFlowLLM automates miRNA literature curation using LLMs and flowcharts, achieving high accuracy and efficiency in annotating gene silencing data.

RNAcentral integrates literature and gene-level data to enhance non-coding RNA sequence analysis and functional understanding.

The paper introduces uPheno, a framework for cross-species phenomics integration by harmonizing phenotype data across species and ontologies.

This paper uses AlphaFold 2.0 structure models to detect homologous protein pairs, finding similar results to sequence-based methods and identifying novel homologues.

The paper describes PomBase, a database for fission yeast, and highlights its features and contributions to the model organism database community.

JaponicusDB provides a model organism database for S. japonicus, leveraging PomBase's code to support data integration and curation for fission yeast research.

The paper introduces a Gene Ontology annotation quality control system that identifies and corrects errors in gene product co-annotation by analyzing mutual exclusivity patterns across biological processes.

The paper identifies conserved but unstudied proteins in yeast and human, highlighting their potential importance and proposing strategies to better characterize them.

The paper analyzes transcriptional regulatory networks in yeast to identify novel features of gene regulation in protein transactions, finding that transcriptional regulation is underrepresented and controlled by few regulators.