Antonio Hermoso

Organisational principles of long non-coding RNAs revealed by exon deletion

This study uses CRISPR-Cas9 to identify functional exons in lncRNAs, finding most exons are non-functional and functionality is enriched at the 5' end.

ExOrthist: a tool to infer exon orthologies at any evolutionary distance

ExOrthist infers exon orthologies across species by analyzing exon sequences and their surrounding intron context, enabling analysis at any evolutionary distance.

Parallel and scalable workflow for the analysis of Oxford Nanopore direct RNA sequencing datasets

The paper introduces a scalable workflow for analyzing Oxford Nanopore direct RNA sequencing data, enabling RNA modification detection and polyA tail length estimation.

Comparative Gene Essentiality across the Bacterial Domain

The paper analyzes gene essentiality across 47 bacterial species, finding a correlation between genome size and essential gene functions, and identifies conserved non-essential genes.

LncATLAS database for subcellular localisation of long noncoding RNAs

LncATLAS provides a database of lncRNA subcellular localization in human cells using RNA-seq data, offering tools to query and compare localization across cell types and organelles.

Hi-Cpipe: a pipeline for high-throughput chromosome capture

HiC-inspector provides a toolkit for analyzing and visualizing HiC data, including data formatting, alignment, quality control, interaction identification, and interactive visualization.