Elliot A. Hershberg

The paper identifies impactful rare variants by integrating multi-omic data from MESA, showing that combining expression and protein data increases the detection of rare stop and frameshift variants.

JBrowse 2 is a genome browser with enhanced views for structural variation and synteny, offering modular design and multiple usage options.

The paper introduces O-MAP, a method for discovering RNA-interacting proteins, transcripts, and genomic loci in situ with high precision and without genetic manipulation.

JBrowse Jupyter provides a Python interface to JBrowse 2 for interactive genomic visualization within Jupyter notebooks.

PaintSHOP provides an interactive platform for designing oligonucleotide FISH experiments, integrating machine learning to predict probe specificity and generate standardized probe sets.