Conor K. Camplisson

DNA O-MAP identifies molecular neighborhoods around specific genomic loci using programmable probes and proteomics.

CellCycleNet predicts cell cycle phases from 3D nuclear-stained images, outperforming SVM models and showing strong generalization across microscopes.

The paper uses O-MAP to study a cardiac-specific RNA factory around TTN RNA, revealing its chromatin interactions, RNA composition, and role of RBM20 in gene regulation.

The paper introduces Tigerfish, a software tool for designing oligonucleotide probes targeting repetitive DNA intervals across genomes, and demonstrates its application on human chromosomes.

PaintSHOP provides an interactive platform for designing oligonucleotide FISH experiments, integrating machine learning to predict probe specificity and generate standardized probe sets.

This paper introduces CAGE 2.0, a platform for scarless assembly of recoded E. coli genome segments, enabling efficient and safe genome engineering.