Chengcheng Shi

Eleven deep-sea coral genome assemblies unveil insights into evolution, adaptation, and coral biodiversity

The paper presents 11 deep-sea coral genome assemblies, revealing evolutionary dynamics, environmental adaptation, and genetic differences between deep-sea and shallow-sea corals.

A database and comprehensive analysis of the algae genomes

The paper compiles and analyzes 191 algae genomes to study genome features and evolutionary relationships, revealing the phylogenetic path from Glaucophyte to terrestrial plants.

Draft genomes of a male and female Australian jacky dragon (Amphibolurus muricatus)

The paper presents draft genomes of male and female Australian jacky dragons, providing insights into lizard evolution and sex determination.

Symbiont-Screener: a reference-free filter to automatically separate host sequences and contaminants for long reads or co-barcoded reads by unsupervised clustering

Symbiont-Screener separates host sequences from contaminants in long reads or co-barcoded reads using unsupervised clustering without reference alignment, achieving high accuracy in simulated and real data.

Three genomes of Osteoglossidae shed light on ancient teleost evolution

This study presents three Osteoglossidae genomes to explore ancient teleost evolution, revealing divergence times and genomic changes linked to continental drift and dietary adaptations.

Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses

The paper reports complete chloroplast genomes of 14 mangrove species and performs phylogenetic and genomic comparative analyses to understand their evolutionary relationships.

Sequencing of Panax notoginseng genome reveals genes involved in disease resistance and ginsenoside biosynthesis

The paper reports the first de novo genome of Panax notoginseng, identifies gene family contractions and expansions related to disease resistance and ABC transporters, and maps key genes in the ginsenoside biosynthesis pathway.