Author

Keir M. Balla

Chan Zuckerberg Biohub San FranciscoORCID 0000-0003-2474-7953Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Organism:zebrafish· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:experimental assay· 1

Frequent Co-Authors

Yang Joon KimiD· 2 shared Aaron McGeeveriD· 1 shared Adrián JacoboiD· 1 shared Ahmet Can SolakiD· 1 shared Alejandro A. GranadosiD· 1 shared Alexandre DizeuxiD· 1 shared Andy ZhouiD· 1 shared Angela M. DetweileriD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Yang Joon KimORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintJun 19, 2026

RNAquarium: an archive-scale atlas of zebrafish gene expression coupled with pan-taxonomic profiling reveals diverse viral drivers of transcriptomic states

Yttria Aniseia, Eric Waltari, H. H. HUANG…·Keir M. Balla

RNAquarium integrates zebrafish and metatranscriptomic data to identify viral drivers of transcriptomic states and support foundation-model training.

1 citation

zebrafishbulk RNA-seq

𝕏 PostBluesky

Developmental BiologybioRxivPreprintMar 6, 2023

Zebrahub - Multimodal Zebrafish Developmental Atlas Reveals the State Transition Dynamics of Late Vertebrate Pluripotent Axial Progenitors

Merlin Lange, Alejandro A. Granados, Shruthi VijayKumar…·Löıc A. Royer

Zebrafish embryos sequenced individually across ten developmental stages, paired with light-sheet lineage reconstruction, form an atlas and browser for in silico fate mapping.

66 citations

zebrafishscRNA-seq

𝕏 PostBluesky