Author

Se‐Ran Jun

University of Arkansas for Medical SciencesORCID 0000-0003-2681-3950Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Zulema UdaondoiD· 3 shared Kaleb Z. AbramiD· 2 shared Atul KothariiD· 1 shared David Wayne UsseryiD· 1 shared Katrina Schlum· 1 shared Michael Scott RobesoniD· 1 shared Scott EmrichiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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3 shared papersBioinformatics

Zulema UdaondoORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 19, 2022

Genomic Distance-based Rapid Uncovering of Microbial Population Structures (GRUMPS): a reference free genomic data cleaning methodology

Kaleb Z. Abram, Zulema Udaondo, Michael Scott Robeson, Se‐Ran Jun

GRUMPS cleans genomic datasets by identifying and removing low-quality and misidentified genomes, enabling accurate analysis of bacterial population structures.

2 citations

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintJul 22, 2021

Insertion sequences associated with antibiotic resistance genes in Enterococcus isolates from an inpatient with prolonged bacteremia.

Zulema Udaondo, Kaleb Z. Abram, Atul Kothari, Se‐Ran Jun

The paper investigates the role of insertion sequences in antibiotic resistance gene mobilization and phenotype modification in Enterococcus isolates from a patient with prolonged bacteremia.

DOI 10.1101/2021.07.22.453447

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 9, 2019

Improved bacteria population structure analysis on thousands of genomes using unsupervised methods

Katrina Schlum, Se‐Ran Jun, Zulema Udaondo…·Scott Emrich

The paper applies unsupervised clustering to analyze population structure in thousands of bacterial genomes, showing improved identification of mixed genomes and inter-related groups.

1 citation

E. coliC. elegans

𝕏 PostBluesky