Author

Kaleb Z. Abram

University of Arkansas for Medical SciencesORCID 0000-0002-3311-662XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Approach:experimental assay· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Zulema UdaondoiD· 3 shared Michael Scott RobesoniD· 2 shared Se‐Ran JuniD· 2 shared Atul KothariiD· 1 shared Carissa BlekeriD· 1 shared David Wayne UsseryiD· 1 shared Trudy M. WassenaariD· 1 shared Visanu WanchaiiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 19 mutual co-author links

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3 shared papersGenomics

Zulema UdaondoORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 19, 2022

Genomic Distance-based Rapid Uncovering of Microbial Population Structures (GRUMPS): a reference free genomic data cleaning methodology

Kaleb Z. Abram, Zulema Udaondo, Michael Scott Robeson, Se‐Ran Jun

GRUMPS cleans genomic datasets by identifying and removing low-quality and misidentified genomes, enabling accurate analysis of bacterial population structures.

2 citations

bacteria (other)whole-genome sequencing

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GenomicsbioRxivPreprintJul 22, 2021

Insertion sequences associated with antibiotic resistance genes in Enterococcus isolates from an inpatient with prolonged bacteremia.

Zulema Udaondo, Kaleb Z. Abram, Atul Kothari, Se‐Ran Jun

The paper investigates the role of insertion sequences in antibiotic resistance gene mobilization and phenotype modification in Enterococcus isolates from a patient with prolonged bacteremia.

DOI 10.1101/2021.07.22.453447

humanwhole-genome sequencing

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GenomicsCommunications BiologyPeer-reviewedJan 26, 2021

What can we learn from over 100,000 Escherichia coli genomes?

Kaleb Z. Abram, Zulema Udaondo, Carissa Bleker…·David Wayne Ussery

This study analyzes over 100,000 E. coli genomes to identify 14 phylogroups, revealing population structure and genomic adaptations in virulence and antibiotic resistance.

126 citationstop 1%

E. coliwhole-genome sequencing

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