Author

Darrin Lemmer

Translational Genomics Research InstituteORCID 0000-0003-2785-6928Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Organism:C. elegans· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Paul KeimiD· 4 shared David M. EngelthaleriD· 2 shared Heidie HornstraiD· 2 shared Jason TravisiD· 2 shared Jason W. SahliD· 2 shared Adam J. VazqueziD· 1 shared Amalee E. Nunnally· 1 shared Breezy N. Brock· 1 shared

Activity by Year

2016-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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4 shared papersBioinformatics

Paul KeimORCID

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Author profile →

4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 10, 2020

Phylogenetic Analysis of St. Louis Encephalitis Virus within Two Southwestern United State Counties: a case for a bulk introduction event into the southwest United States

Chase L. Ridenour, Jill Hager Cocking, Samuel Poidmore…·Crystal M. Hepp

The paper uses phylogenetic analysis to determine if St. Louis Encephalitis Virus (SLEV) in Arizona and California originated from local cycling or new imports, finding evidence of annual imports in California and local cycling in Arizona.

DOI 10.1101/2020.06.10.143818

statistical modelphylogenetics / evolution

𝕏 PostBluesky

GenomicsMicrobial GenomicsPeer-reviewedMay 20, 2019

A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network

Charles H. D. Williamson, Nathan E. Stone, Amalee E. Nunnally…·Jason W. Sahl

This study uses whole genome sequencing to analyze C. difficile isolates and identifies multiple introductions and transmission events in a healthcare network, highlighting genetic variability and antimicrobial resistance.

8 citations

C. eleganswhole-genome sequencing

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedAug 25, 2016

The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets

Jason W Sahl, Darrin Lemmer, Jason Travis…·Paul Keim

NASP is a WGS pipeline for SNP detection in bacterial genomes, showing comparable or better performance than existing tools with greater flexibility.

DOI 10.1099/mgen.0.000074

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

Molecular BiologybioRxivPreprintMar 14, 2016

KlebSeq: A Diagnostic Tool for Healthcare Surveillance and Antimicrobial Resistance Monitoring of Klebsiella pneumoniae

Jolene R. Bowers, Darrin Lemmer, Jason W. Sahl…·Paul Keim

KlebSeq is a diagnostic tool that detects Klebsiella pneumoniae and identifies antimicrobial resistance and virulence traits using amplicon sequencing for healthcare surveillance.

DOI 10.1101/043471

humanDNA methylation

𝕏 PostBluesky