Joaquín Navajas Acedo

FOCUS-3D segments cells in 3D fluorescence microscopy data across species and tissues, revealing phases of notochord morphogenesis in zebrafish.

The paper identifies transcriptional domains in the zebrafish olfactory bulb that correlate with odor preference and shows specific neuronal subtypes are recruited based on odor preference.

ITEC reconstructs high-fidelity cell lineages and fate maps of embryos with over 99.7% accuracy using iterative tracking and error correction.

The paper introduces a whole-embryo spatial transcriptomics method and generates a comprehensive gene expression and chromatin accessibility atlas in zebrafish embryos.

This study shows that cranial neural crest cells are essential for the development of the zebrafish anterior lateral line system, including its neuromasts and ganglia.

The paper shows that zebrafish retain both primary and secondary somatosensory systems throughout development, challenging the notion that Rohon-Beard neurons are transient.

This study uses scRNA-Seq to analyze zebrafish hair cell regeneration, identifying three sequential transcriptional modules involved in the process.

This study provides the first single-cell RNA-seq time course of zebrafish brain development, revealing the emergence of neuronal diversity and distinct neurogenic regulatory patterns across developmental stages.

The paper shows that PCP and Wnt pathways independently control hair cell orientation in zebrafish lateral line, with Wnt mutants causing concentric patterns and PCP mutants causing random orientations.