Author
Broad InstituteORCID 0000-0003-2926-2787Unclaimed ORCID profile · follow to get notified of new preprints
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4 papers
Recent·Most cited
Karen E. Christianson, Jacob D. Jaffe, Steven A. Carr, Alvaro Sebastian Vaca Jácome
The paper introduces a cloud-based implementation of the AvG algorithm for DIA data analysis, improving efficiency and accessibility for large datasets.
D.R. Mani, Myranda Maynard, Ramani Bhupendra Kothadia…·Steven A. Carr
PANOPLY is a cloud-based platform that automates and reproducibly analyzes proteogenomic data by integrating genomic, transcriptomic, proteomic, and post-translational modification data.
Özgün Babur, Augustin Luna, Anil Korkut…·Emek Demir
The paper introduces a computational method to generate causal explanations for proteomic profiles by integrating molecular data with prior biological pathway knowledge, demonstrating its application in various biological contexts.
Alvaro Sebastian Vaca Jácome, Ryan Peckner, Nicholas Shulman…·Jacob D. Jaffe
Avant-garde improves DIA data analysis by refining signals, reducing interference, and controlling false discovery rates through a data-driven approach.