Koen J. F. Verhoeven

This study evaluates heat stress tolerance in Lemna minor, showing that both local adaptation and acclimation contribute to variation in performance, with transient genetic differences and temperature-dependent acclimation.

This study shows that environmental and demographic variation additively reduce the repeatability of evolution in replicated experiments with Caenorhabditis elegans.

This study compares universal and custom target capture sequencing kits for detecting intraspecific genetic variation in dandelions, finding that universal kits provide sufficient variation for discrimination despite lower diversity.

This study analyzes the methylome of Populus nigra cv. 'Italica' under various environmental stresses and identifies stress-specific and generic methylation responses.

AlphaBeta estimates epimutation rates and spectra from DNA methylation data in plants, showing conserved epimutation landscapes and providing a molecular clock for tree age-dating.

epiGBS2 improves upon epiGBS by offering a more flexible, cost-effective, and user-friendly protocol and bioinformatics pipeline for methylation and genetic analysis.

The paper discusses experimental design for large-scale omic studies, emphasizing the importance of balancing omics batches and accounting for experimental factors to improve statistical power.

The paper shows that small RNAs in apomictic dandelion lineages reflect drought stress and salicylic acid treatment from two generations ago, indicating transgenerational epigenetic effects.