Aikaterini Symeonidi

A transient CD87-centred axis enhances the Th17 potential of cDC2 in neonates

The paper identifies a CD87-dependent coagulation pathway that enhances Th17 potential in neonatal cDC2, with implications for early-life immunity.

Benchmarking scRNA-seq copy number variation callers

This study benchmarks six scRNA-seq CNV callers using 15 datasets, finding that reference choice and allelic information impact performance, with some methods being more robust but computationally intensive.

Multi-generational biotic stress increases the rate of spontaneous epimutations in a ROS1-dependent manner

The paper shows that multi-generational exposure to biotic stress increases epimutation rates in Arabidopsis, mediated by ROS1, affecting low-methylation genes.

epiAneufinder: identifying copy number variations from single-cell ATAC-seq data

epiAneufinder identifies copy number variations from scATAC-seq data to explore single-cell CNV heterogeneity in cancer samples.

Recursive Convolutional Neural Networks for Epigenomics

This paper introduces a Recursive Convolutional Neural Network for predicting gene expression from histone modification intensity, achieving better performance with fewer parameters.

AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

AlphaBeta estimates epimutation rates and spectra from DNA methylation data in plants, showing conserved epimutation landscapes and providing a molecular clock for tree age-dating.