Author

Amrita Banerjee

Vanderbilt UniversityORCID 0000-0003-3631-9390Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1

Frequent Co-Authors

Alan J. SimmonsiD· 2 shared Ken S. LauiD· 2 shared Bob CheniD· 1 shared Charles A. HerringiD· 1 shared Deronisha ArceneauxiD· 1 shared Erin P. SmithiD· 1 shared Guoqiang GuiD· 1 shared Harsimran KauriD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

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10 top collaborators · 30 mutual co-author links

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2 shared papersCell Biology

Alan J. SimmonsORCID

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2 papers

Recent·Most cited

Cell BiologybioRxivPreprintJan 4, 2025

Pathobiont-triggered induction of epithelial IDO1 drives regional susceptibility to Inflammatory Bowel Disease

Paige N Spencer, Jiawei Wang, Erin P. Smith…·Ken S. Lau

The paper identifies a pathobiont-epithelial IDO1 pathway that drives region-specific susceptibility to inflammatory bowel disease in the ascending colon.

DOI 10.1101/2025.01.04.630951

mousebulk RNA-seq

𝕏 PostBluesky

BioinformaticsPLoS BiologyPeer-reviewedOct 22, 2018

Quantitative assessment of cell population diversity in single-cell landscapes

Qi Liu, Charles A. Herring, Quanhu Sheng…·Ken S. Lau

This paper introduces sc-UniFrac, a framework to quantify compositional diversity in cell populations across single-cell transcriptome datasets, demonstrating its utility in various applications.

38 citations

scRNA-seqstatistical model

𝕏 PostBluesky