Stefan M. Kallenberger

The paper introduces Suco and Compocyte to classify immune cells from 3,965 patients, identifying new macrophage and monocyte states and T cell memory erosion in metastases.

This paper presents a framework for integrating single-cell and bulk data using nonlinear mixed-effect models and tailored parameter estimation, improving parameter identifiability and prediction accuracy.

This study uses time-resolved RNA sequencing and mathematical modeling to analyze SARS-CoV-2 host cell interactions, revealing transcriptional dynamics and identifying druggable host pathways.

This study identifies a cell-circuit framework for wound healing and fibrosis, revealing three fibrosis outcomes and parameters that control the transition from healing to fibrosis.

This paper introduces 3D SPECS, a method to map spatial protein localization in 3D cell cultures and analyze mitotic protein networks, revealing novel insights into spindle fragility and chromatin stress.