Author

Alison C. McGarvey

Max Delbrück CenterORCID 0000-0003-3838-1139Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Organism:zebrafish· 2 Research Focus:benchmarking· 1 Approach:biophysical modeling· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Scott Allen LacadieiD· 2 shared Uwe OhleriD· 2 shared Wolfgang KoppiD· 2 shared Abdul Kadir MukarramiD· 1 shared Ada Jiménez-GonzáleziD· 1 shared Alexandra TrinksiD· 1 shared Altuna AkaliniD· 1 shared Ana PomboiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersDevelopmental Biology

Scott Allen LacadieORCID

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3 papers

Recent·Most cited

Cell BiologybioRxivPreprintNov 27, 2025

Direct recruitment of RNA Polymerase II by NANOG to activated target genes

Nicholas P. Mullin, Elisa Barbieri, Jingchao Zhang…·Ian Chambers

This study identifies a direct interaction between NANOG and RNA Polymerase II that regulates transcription and ESC self-renewal.

DOI 10.1101/2025.11.27.690710

𝕏 PostBluesky

Developmental BiologyNature GeneticsPeer-reviewedJul 1, 2022

Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish

Damir Baranas̆ić, Matthias Hörtenhuber, Piotr J. Balwierz…·Ferenc Müller

The paper creates a central repository for zebrafish developmental genomics data, identifies new cis-regulatory elements, and compares regulatory elements between zebrafish and mouse.

101 citationstop 2%

zebrafishbulk RNA-seq

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GenomicsbioRxivPreprintJun 26, 2020

Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos

Alison C. McGarvey, Wolfgang Kopp, Dubravka Vučićević…·Scott Allen Lacadie

The paper uses sci-ATAC-seq and a new tool, ScregSeg, to analyze chromatin dynamics in zebrafish embryos, revealing roles of npas4l/cloche in cell and regulatory states.

2 citations

zebrafishscATAC-seq

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