Trung Q. Tran

The paper introduces CyCLOPS, a framework to deconvolve cell cycle chromatin occupancy in yeast, revealing dynamic chromatin and transcription patterns at high resolution.

RoboCOP computes chromatin occupancy profiles for multiple factors from epigenomic data, showing improved accuracy over existing methods for yeast nucleosomes and 150 TFs.

The paper develops predictive models linking chromatin dynamics and transcription by analyzing chromatin and RNA data in yeast under cadmium stress.

The paper investigates how nucleosome dynamics and eviction after a double-strand break are reversible via NHEJ repair in yeast, showing re-establishment of chromatin structure in G1-arrested cells.