Author

Emir Bora Akmeriç

Max Delbrück CenterORCID 0000-0003-4463-8017Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Assay:imaging· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:dimensionality reduction· 1

Frequent Co-Authors

Holger GerhardtiD· 3 shared Olya OppenheimiD· 2 shared Wolfgang GieseiD· 2 shared Ana VelićiD· 1 shared André RosaiD· 1 shared Boris MačekiD· 1 shared Britta TrappmanniD· 1 shared Deborah SchmidtiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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3 shared papersBioinformatics

Holger GerhardtORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedFeb 8, 2025

Polarity-JaM: An image analysis toolbox for cell polarity, junction and morphology quantification

Wolfgang Giese, Jan Philipp Albrecht, Olya Oppenheim…·Holger Gerhardt

Polarity-JaM is an open-source image analysis tool for quantifying cell polarity, junctions, and morphology using deep learning and provides statistical analysis features.

17 citationstop 2%

humanimaging

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Cell BiologybioRxivPreprintJun 25, 2024

Mechanical Strain Activates Planar Cell Polarity Signaling to Coordinate Vascular Cell Dynamics

Lieke A. Golbach, Tanumoy Saha, Maria Odenthal-Schnittler…·Maja Matis

This study identifies Vangl1 as a key mediator of flow-dependent cell dynamics in vascular remodeling through planar cell polarity signaling.

1 citation

mouseimaging

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Developmental BiologybioRxivPreprintMay 30, 2023

Reconstructing stochastic cell population trajectories reveals regulators and heterogeneity of endothelial flow-migration coupling driving vascular remodelling

Wolfgang Giese, André Rosa, Elisabeth Baumann…·Holger Gerhardt

The paper develops a computational model to analyze EC migration during vascular remodelling, finding that directional migration is driven by dual force fields and mediated by Cdc42 with cell population heterogeneity.

2 citations

mousebulk RNA-seq

𝕏 PostBluesky