Author

Miguel Cuevas

Columbia University Irving Medical CenterORCID 0000-0003-4469-7180Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Organism:mouse· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1

Frequent Co-Authors

Hemali P. PhatnaniiD· 4 shared Catherine BraineiD· 3 shared Kristy KangiD· 3 shared Silas ManiatisiD· 3 shared Joakim LundebergiD· 2 shared Richard BonneauiD· 2 shared Sanja VickovićiD· 2 shared Tarmo ÄijöiD· 2 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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4 shared papersGenomics

Hemali P. PhatnaniORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintAug 27, 2021

PySeq2500: An open source toolkit for repurposing HiSeq 2500 sequencing systems as versatile fluidics and imaging platforms.

Kunal Pandit, Joana Petrescu, Miguel Cuevas…·Silas Maniatis

PySeq2500 converts the HiSeq 2500 into an open platform for programmable fluidics and imaging, enabling automated multi-day workflows for multiplexed imaging of biological samples.

1 citation

mousehuman

𝕏 PostBluesky

GenomicsCellsPeer-reviewedJun 5, 2020

Cell-type specific in vitro gene expression profiling of stem-cell derived neural models

James A. Gregory, Emily Hoelzli, Rawan Abdelaal…·Hemali P. Phatnani

The paper extends the RiboTag system for cell-type specific RNA depletion in vitro, showing variable efficiency across replicates.

8 citations

mousehuman

𝕏 PostBluesky

BioinformaticsbioRxivPreprintSep 5, 2019

Splotch: Robust estimation of aligned spatial temporal gene expression data.

Tarmo Äijö, Silas Maniatis, Sanja Vicković…·Richard Bonneau

Splotch aligns spatial transcriptomics data across tissue sections and timepoints to improve gene expression estimates and study optimal experimental design.

21 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

NeuroscienceSciencePeer-reviewedApr 4, 2019

Spatiotemporal Dynamics of Molecular Pathology in Amyotrophic Lateral Sclerosis

Silas Maniatis, Tarmo Äijö, Sanja Vicković…·Hemali P. Phatnani

Analysis of the ALS spinal cord using Spatial Transcriptomics reveals spatiotemporal dynamics of disease driven gene regulation.

429 citationstop 1%

mousehuman

𝕏 PostBluesky