Author

Manuel Rubio

Consejo Superior de Investigaciones CientíficasORCID 0000-0003-4605-8227Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Plant Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:plant (other)· 3 Assay:imaging· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Federico DicentaiD· 2 shared Jorge Mas-GómeziD· 2 shared Pedro J. Martínez‐GarcíaiD· 2 shared Bruno HüetteliD· 1 shared Chang LiuiD· 1 shared Christian KukatiD· 1 shared David RuiziD· 1 shared Henri DuvaliD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersPlant Biology

Federico DicentaORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Plant BiologybioRxivPreprintJul 7, 2026

From Phenomics to Genomics: Macro-GWAS of Almond Morphology and Quality

Jorge Mas-Gómez, Manuel Rubio, Henri Duval…·Pedro J. Martínez‐García

This study integrates high-throughput phenomics and genomics to identify marker-trait associations and candidate genes for almond morphology and quality traits.

DOI 10.64898/2026.07.06.736816

plant (other)imaging

𝕏 PostBluesky

Plant BiologybioRxivPreprintMay 5, 2025

Open RGB Imaging Workflow for Morphological and Morphometric Analysis of Fruits using AI: A Case Study on Almonds.

Jorge Mas-Gómez, Manuel Rubio, Federico Dicenta, Pedro J. Martínez‐García

The paper develops an open Python workflow using AI to analyze fruit morphology and morphometric traits in almonds, identifying new heritable traits for improved breeding strategies.

DOI 10.1101/2025.05.05.652179

plant (other)imaging

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedDec 1, 2020

Chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

José Antonio Campoy, Hequan Sun, Manish Goel…·Korbinian Schneeberger

This paper develops a method to generate chromosome-level, haplotype-resolved genome assemblies using single-cell sequencing of gametes, demonstrating it on apricot trees.

76 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky