Lydia Hadjeras

This paper revises the genome annotation of Synechocystis using ribosome profiling and proteogenomics, identifying new genes and correcting existing annotations.

The paper expands the known proteome of Sinorhizobium meliloti by identifying 48 novel small proteins using Ribo-seq and proteogenomics.

This study shows that attaching RNase E to the inner cytoplasmic membrane in E. coli prevents the degradation of rRNA intermediates during ribosome assembly, explaining the evolutionary conservation of this localization.

HRIBO is a workflow for analyzing bacterial Ribo-seq data to discover novel ORFs, using annotation-independent methods and integrating additional features for prioritization.