Author
European Bioinformatics InstituteORCID 0000-0003-4838-443XUnclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Holly McCann, Caeden D. Meade, Loren Dean Williams…·Anton I. Petrov
R2DT is a software platform for visualizing RNA secondary structures with enhanced features like SNP display and template-free visualization.
Ibrahim Roshan Kunnakkattu, Preeti Choudhary, Lukáš Pravda…·Sameer S Velankar
PDBe CCDUtils processes and analyzes small molecules from the PDB using RDKit, offering tools for property computation and database cross-references.
Sri Devan Appasamy, John M. Berrisford, Romana Gáborová…·Sameer S Velankar
The paper standardizes naming and annotations for macromolecular complexes in the PDB using external resources, improving FAIRness and enabling better research and education.
Joseph I. J. Ellaway, Stephen Anyango, Sreenath Sasidharan Nair…·Sameer S Velankar
The paper clusters experimentally determined protein structures to identify conformational states and compares them to AlphaFold2 predictions.
Preeti Choudhary, Stephen Anyango, John M. Berrisford…·Sameer S Velankar
The paper integrates up-to-date residue-level annotations from multiple databases into PDBx/mmCIF files to improve data interoperability and standardization.
Mihály Váradi, Sreenath Sasidharan Nair, Ian Sillitoe…·Sameer S Velankar
3D-Beacons provides a federated network to unify access to protein structure data from multiple sources, enabling comparative analysis of models.