Author

Emily Pan

University of California San DiegoORCID 0009-0000-5477-1685Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:contrastive learning· 1 Assay:CRISPR screen· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Prashant MaliiD· 2 shared Yesh DoctoriD· 2 shared Yi-Hung LeeiD· 2 shared Yifan Zhang· 2 shared Alina Sigaeva· 1 shared Amir DailamyiD· 1 shared Antoine ForgetiD· 1 shared Benjamin J. PolaccoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioengineering

Prashant MaliORCID

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2 papers

Recent·Most cited

A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS

Sami Nourreddine, Yesh Doctor, Amir Dailamy, Antoine Forget, Yi-Hung Lee, Rebecca Chinn, Hammza Khaliq, Benjamin J. Polacco, Monita Muralidharan, Emily Pan, Yifan Zhang, Alina Sigaeva, Jan N. Hansen, Jiahao Gao, Jillian A. Parker, , Prashant Mali

The paper generates a CRISPRi perturbation cell atlas in human induced pluripotent stem cells, identifies novel regulators of pluripotency and metabolism, and proposes a machine learning framework for predicting perturbation recipes.

Nature Biotechnology · Jul 1, 2026Peer-reviewedBioengineering

Multiplexed Pan Soluble Ligandome Assaying via OASIS

Yi-Hung Lee, Yesh Doctor, Yifan Zhang, Satheesh Kumar, Joseph Rainaldi, Emily Pan, Prashant Mali

The paper introduces OASIS, a method to screen soluble ligands by enforcing autocrine signaling, and applies it to identify self-renewal factors in hiPSCs.

bioRxiv · Dec 23, 2025 · PreprintSynthetic Biology