Author

Kelsey A. Maher

St. Jude Children's Research HospitalORCID 0009-0002-2177-6345Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Alaguraj VeluchamyiD· 1 shared B. SilveriD· 1 shared Bensheng JuiD· 1 shared Brian J. AbrahamiD· 1 shared Courtney G. WillettiD· 1 shared Dongxue WangiD· 1 shared Jie LviD· 1 shared John B. EastoniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMolecular Biology

Alaguraj VeluchamyORCID

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2 papers

Recent·Most cited

3D-super-enhancers are condensate-associated cis-regulatory communities

Jie Lv, Kelsey A. Maher, Li Dong, Virginia A. Valentine, Seth Staller, Alaguraj Veluchamy, Li Tian, Yuna Kim, Bensheng Ju, M B Valentine, John B. Easton, Stanley B Pounds, Steven Burden, Brian J. Abraham

The paper introduces BOUQUET, an algorithm that identifies 3D-super-enhancers as protein-rich cis-regulatory communities associated with co-activator condensates in mammalian cells.

Nucleic Acids Research · Feb 24, 2026Peer-reviewedMolecular Biology

Differences in transcription initiation directionality underlie distinctions between plants and animalsin chromatin modification patterns at genes and cis-regulatory elements

B. Silver, Courtney G. Willett, Kelsey A. Maher, Dongxue Wang, Roger B. Deal

The paper compares transcription initiation directionality in plants and animals, finding unidirectional initiation in plants and bidirectional in animals, with distinct chromatin modification patterns.

G3 Genes Genomes Genetics · Jan 22, 2024Peer-reviewedGenomics