Author

Sophia T. Girgis

Wellcome Sanger InstituteORCID 0009-0003-2368-0432Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:genome assembly· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alex MakuniniD· 1 shared Alexandria J. R. HarrottiD· 1 shared Antoine ClaessensiD· 1 shared Camille CoheniD· 1 shared Collins Misita Morang’aiD· 1 shared Dodzi Kwaku Jnr Senoo· 1 shared Dominic P. KwiatkowskiiD· 1 shared Edem AdikaiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperGenomics

Alex MakuninORCID

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2 papers

Recent·Most cited

GenomicsG3 Genes Genomes GeneticsPeer-reviewedOct 27, 2026

De novo assembly of complete Plasmodium falciparum isolate genomes using PacBio HiFi sequencing technology

Prince Nyarko, Mathieu Quenu, Marc-Antoine Guery…·Antoine Claessens

This study uses PacBio HiFi sequencing to assemble complete Plasmodium falciparum genomes from natural infections, revealing full repertoires of immune-related genes.

2 citationstop 3%

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintDec 20, 2022

Nanopore sequencing for real-time genomic surveillance of Plasmodium falciparum

Sophia T. Girgis, Edem Adika, Felix E. Nenyewodey…·William L. Hamilton

This study implements a Nanopore sequencing workflow for P. falciparum genomic surveillance in Ghana, identifying drug resistance patterns and vaccine antigen variations.

5 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky