Author

John Vianney Tushabe

University of GlasgowORCID 0009-0003-4152-2550Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Research Focus:genome assembly· 1

Frequent Co-Authors

Duncan BergeriD· 4 shared James Anthony CottoniD· 4 shared Matthew BerrimaniD· 4 shared Stephen R. DoyleiD· 4 shared Fiona AllaniD· 3 shared Joanne P. WebsteriD· 3 shared Thomas CrelleniD· 3 shared Aidan Mark EmeryiD· 2 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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4 shared papersGenomics

Duncan BergerORCID

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4 papers

Recent·Most cited

MicrobiologyInternational Journal for Parasitology Drugs and Drug ResistancePeer-reviewedMar 18, 2026

TRPtracker: a community database for monitoring praziquantel sensitivity at TRPMPZQ variants

Claudia M. Rohr, Sang-Kyu Park, Kelsilandia Aguiar-Martins…·Jonathan S. Marchant

TRPtracker aggregates TRPMPZQ variants and their PZQ sensitivity data to monitor resistance and support schistosomiasis control strategies.

4 citationstop 1%

experimental assaydatabase / resource

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GenomicsbioRxivPreprintAug 29, 2024

Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni

Duncan Berger, Sang-Kyu Park, Thomas Crellen…·Joanne P. Webster

The paper uses population genomics and functional genetics to identify praziquantel resistance variants in Schistosoma mansoni.

17 citations

humanwhole-genome sequencing

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GenomicsbioRxivPreprintJan 25, 2022

Genome-wide analysis of Schistosoma mansoni reveals population structure and praziquantel drug selection pressure within Ugandan hot-spot communities

John Vianney Tushabe, Duncan Berger, Stephen R. Doyle…·James Anthony Cotton

The paper analyzes whole-genome sequences of Schistosoma mansoni from Ugandan fishing communities to assess population structure and genetic changes associated with praziquantel treatment.

3 citations

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GenomicsFrontiers in GeneticsPeer-reviewedSep 20, 2019

Evaluation of DNA extraction methods on individual helminth egg and larval stages for whole genome sequencing

Stephen R. Doyle, Geetha Sankaranarayanan, Fiona Allan…·Nancy E. Holroyd

The paper evaluates DNA extraction methods for whole genome sequencing of individual helminth eggs and larvae, showing successful sequencing for six of eight species tested.

54 citationstop 2%

whole-genome sequencingexperimental assay

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