Ilario Tagliaferri

The paper develops 4f-SAMMY-seq to map euchromatin and heterochromatin based on accessibility and solubility, and reconstructs their 3D compartmentalization in one experiment.

This paper introduces a statistical framework integrating 3D chromatin architecture to improve enhancer-target gene pairing and benchmark it against existing methods.

HPC-REDItools improves RNA-editing analysis by enabling faster processing of large datasets using MPI-based parallel computing.

The paper introduces ChIC, a ChIP-seq quality assessment framework that evaluates enrichment profile shape, providing a reliable score for data quality.