Author

Judith Mary Hariprakash

IFOMORCID 0000-0002-1164-347XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cancer & tumor microenvironment· 1 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Astrid Zedlitz JohanseniD· 1 shared Birgitte RegenbergiD· 1 shared Dan HaoiD· 1 shared Egija ZoleiD· 1 shared Elisa SalviatoiD· 1 shared Francesco FerrariiD· 1 shared Ilario TagliaferriiD· 1 shared Julia Sidenius JohanseniD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCancer Biology

Astrid Zedlitz JohansenORCID

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2 papers

Recent·Most cited

Functional Role of Small Extrachromosomal Circular DNA in Colorectal Cancer

Judith Mary Hariprakash, Egija Zole, Weijia Feng, Dan Hao, Lasse Bøllehuus Hansen, Nirmalya Bandyopadhyay, Marghoob Mohiyuddin, Sihan Wu, Astrid Zedlitz Johansen, Julia Sidenius Johansen, Birgitte Regenberg

This study investigates the role of small extrachromosomal circular DNA (eccDNA) in colorectal cancer, finding that it contributes to gene expression, immune cell recruitment, and poor patient outcomes.

bioRxiv · Aug 1, 2025 · PreprintCancer Biology

Leveraging three-dimensional chromatin architecture for effective reconstruction of enhancer-target gene regulatory network

Elisa Salviato, Vera Djordjilović, Judith Mary Hariprakash, Ilario Tagliaferri, Koustav Pal, Francesco Ferrari

This paper introduces a statistical framework integrating 3D chromatin architecture to improve enhancer-target gene pairing and benchmark it against existing methods.

Nucleic Acids Research · Jun 17, 2021Peer-reviewedGenomics