Alekhya Abhiram Kandoor

ProteomeScout v4 provides an open-source ecosystem for aggregating and harmonizing post-translational modification data with web and code-based access tools.

The paper develops a theoretical framework to predict avidity in bivalent protein interactions using structure-informed modeling and experimental validation.

SpY-C classifies phosphopeptide sites as potential SH2 domain binders using supervised learning, improving annotation of pY function and informing downstream machine learning approaches.

The paper develops CoDIAC, a tool for analyzing domain interfaces, revealing new insights into SH2 domain function and regulation through phosphorylation and acetylation.

The paper constructs a Boolean network model of C. elegans developmental pathways to identify causal relationships determining dauer fate based on environmental signals.