Author

David Seki

University of ViennaORCID 0009-0005-9962-0422Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

David Seki1 paper

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Approach:experimental assay· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1 Organism:rat· 1

Frequent Co-Authors

Lindsay J. HalliD· 2 shared Lucy I. CrouchiD· 2 shared Magdalena KujawskaiD· 2 shared Raymond KiuiD· 2 shared Antia Acuna-GonzaleziD· 1 shared Bettina GlasliD· 1 shared Cassie R. BakshaniiD· 1 shared Christoph GranderiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersMicrobiology

Lindsay J. HallORCID

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3 papers

Recent·Most cited

MicrobiologyISME CommunicationsPeer-reviewedJan 1, 2026

Revised 16S rRNA V4 hypervariable region targeting primers enhance detection of Patescibacteria and other lineages across diverse environments

Huifeng Hu, Clemens Karwautz, Kalina Duszka…·Petra Pjevac

The paper introduces improved 16S rRNA V4 primers that enhance detection of underrepresented microbial lineages across diverse environments.

DOI 10.1093/ismeco/ycag141

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologyCell Host & MicrobePeer-reviewedSep 1, 2025

Host-specific microbiome and genomic signatures in Bifidobacterium reveal co-evolutionary and functional adaptations across diverse animal hosts

Magdalena Kujawska, David Seki, Lisa Chalklen…·Lindsay J. Hall

This study identifies host-specific genomic and microbiome adaptations in Bifidobacterium across diverse animal hosts, revealing co-evolutionary dynamics and functional traits shaped by diet and phylogeny.

15 citationstop 4%

𝕏 PostBluesky

MicrobiologybioRxivPreprintMar 24, 2025

Mutualistic interactions between Escherichia coli and Bifidobacterium bifidum enable degradation of human milk oligosaccharides in healthy infants

David Seki, Shaul Pollak, Magdalena Kujawska…·Lindsay J. Hall

The paper shows that Escherichia coli and Bifidobacterium bifidum have a mutualistic interaction in degrading human milk oligosaccharides in healthy infants.

2 citations

humanmetagenomics

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