Chenyang Yuan

NetworkSSC improves single-cell clustering by integrating gene network information, outperforming traditional methods on multiple scRNA-seq datasets.

MorphLink identifies disease-related morphological-molecular interplays in multi-modal spatial omics data by linking interpretable morphological features with molecular measurements.

The paper introduces mcDETECT, a machine learning framework for detecting RNA granules in spatial transcriptomics data, revealing functionally distinct neuronal substates and early Alzheimer's disease pathology.