Author

Timothée Chaumier

Centre National de la Recherche ScientifiqueORCID 0009-0008-7923-1683Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Assay:DNA methylation· 2 Approach:experimental assay· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Organism:Drosophila· 1

Frequent Co-Authors

Eric ManirakizaiD· 3 shared Leı̈la TirichineiD· 3 shared Yue WuiD· 2 shared Agnès GroisillieriD· 1 shared Alaguraj VeluchamyiD· 1 shared Bruno JesusiD· 1 shared Feng YangiD· 1 shared Gwenaël PiganeauiD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersBioinformatics

Eric ManirakizaORCID

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3 papers

Recent·Most cited

BioinformaticsMicrobiology Resource AnnouncementsPeer-reviewedAug 27, 2024

Genomic sequences and annotations of two pseudomonas species isolated from marine and terrestrial habitats

Eric Manirakiza, Timothée Chaumier, Leı̈la Tirichine

The paper provides the complete genome sequences and annotations of two Pseudomonas species from marine and terrestrial environments, available on BacBrowse.

DOI 10.1128/mra.00373-24

bacteria (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsISME CommunicationsPeer-reviewedJan 1, 2024

Genome wide assessment of genetic diversity and transcript variations in 17 accessions of the model diatom Phaeodactylum tricornutum

Timothée Chaumier, Feng Yang, Eric Manirakiza…·Leı̈la Tirichine

The paper assesses genetic and transcriptomic diversity in 17 Phaeodactylum tricornutum accessions, revealing increased genetic diversity and novel clades, while showing no link between sampling year and diversity loss.

20 citations

DNA methylationbulk RNA-seq

𝕏 PostBluesky

BioinformaticsScientific ReportsPeer-reviewedMay 23, 2023

PhaeoEpiView: An epigenome browser of the newly assembled genome of the model diatom Phaeodactylum tricornutum

Yue Wu, Timothée Chaumier, Eric Manirakiza…·Leı̈la Tirichine

The paper introduces PhaeoEpiView, an epigenome browser for the updated genome of Phaeodactylum tricornutum, integrating DNA methylation and histone modifications for better biological interpretation.

17 citations

DrosophilaDNA methylation

𝕏 PostBluesky