Author

Colin M. Henneberry

State University of New YorkORCID 0009-0008-9964-5824Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Assay:imaging· 1 Approach:optimal transport· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Alex A. LemusiD· 2 shared Alex M. ValmiD· 2 shared Ruogu WangiD· 2 shared Alexa J Orsino· 1 shared Bianca AudrainiD· 1 shared David Pérez-PascualiD· 1 shared Dylan R. FarnsworthiD· 1 shared Emmanuel E. AdadeiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Alex A. LemusORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintFeb 27, 2026

Cross hybridization Inference for Phylogenetic Resolution (CIPHR)-FISH enables microbiome imaging with strain level taxonomic resolution

Emmanuel E. Adade, Ruogu Wang, Colin M. Henneberry…·Alex M. Valm

CIPHR-FISH improves microbiome imaging by enabling strain-level taxonomic resolution through machine learning and probe design, revealing spatial community structures in zebrafish.

DOI 10.64898/2026.02.26.708344

zebrafishspatial transcriptomics

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedMar 25, 2023

Unmixing Fluorescence Image Data with Sparse and Low-Rank Poisson Regression

Ruogu Wang, Alex A. Lemus, Colin M. Henneberry…·Alex M. Valm

This paper introduces a sparse and low-rank Poisson unmixing method to improve fluorescence image unmixing accuracy in low signal-to-noise regimes with overlapping fluorophores.

12 citations

imagingstatistical model

𝕏 PostBluesky