Bianca Audrain

Cross hybridization Inference for Phylogenetic Resolution (CIPHR)-FISH enables microbiome imaging with strain level taxonomic resolution

CIPHR-FISH improves microbiome imaging by enabling strain-level taxonomic resolution through machine learning and probe design, revealing spatial community structures in zebrafish.

Coupling metabolic enhancement to plasmid spread enables programmable antimicrobial control

This paper develops conjugative plasmids that block antibiotic resistance plasmid spread by combining metabolic enhancement and plasmid spread mechanisms in microbial communities.

Global analysis of trimeric autotransporters reveals phylogenetically restricted secretion mechanism adaptations

The paper analyzes trimeric autotransporters across bacteria to identify secretion adaptations, finding phylogenetic differences in periplasmic domains and ESPRs.

A Chryseobacterium massiliae pore-forming MACPF domain protein mediates intra and interspecies competition against Bacteroides

This study identifies CSAP-1, a MACPF domain protein from Chryseobacterium massiliae, as a broad-spectrum antimicrobial that inhibits Flavobacteriales species and contributes to zebrafish larval protection against Flavobacterium covae.