Author

Emmanuel E. Adade

State University of New YorkORCID 0000-0002-9886-4039Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alex M. ValmiD· 2 shared Alex A. LemusiD· 1 shared Alexa J Orsino· 1 shared Bianca AudrainiD· 1 shared Bradley R. Smith· 1 shared Cara Theresia PageriD· 1 shared Colin M. HenneberryiD· 1 shared David Pérez-PascualiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersMicrobiology

Alex M. ValmORCID

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintFeb 27, 2026

Cross hybridization Inference for Phylogenetic Resolution (CIPHR)-FISH enables microbiome imaging with strain level taxonomic resolution

Emmanuel E. Adade, Ruogu Wang, Colin M. Henneberry…·Alex M. Valm

CIPHR-FISH improves microbiome imaging by enabling strain-level taxonomic resolution through machine learning and probe design, revealing spatial community structures in zebrafish.

DOI 10.64898/2026.02.26.708344

zebrafishspatial transcriptomics

Molecular BiologybioRxivPreprintJan 17, 2026

Inosine misincorporation into mRNA triggers the integrated stress response and activates an innate immune gene expression signature

Jacob H Schroader, Naa N. Adade, Emmanuel E. Adade…·Kaalak Reddy

This study shows that inosine misincorporation into mRNA activates the integrated stress response and an innate immune gene expression signature, linking ITPase deficiency to cellular stress.

1 citation

humanbulk RNA-seq