bioRxivBiochemistryPreprint
In Situ Microwave Fixation to Define the Terminal Rodent Brain Metabolome
J. A. Juras, M. B. Webb, L. E. A. Young, K. H. Markussen, T. R. Hawkinson, M. D. Buoncristiani, K. E. Bolton, P. T. Coburn, M. I. Wiliams, L. P. Sun, W. C. Sanders, R. C. Bruntz, L. R. Conroy, C. Wang, M. S. Gentry, B. N. Smith, R. C. Sun
Abstract
The brain metabolome directly connects to brain physiology and neuronal function. Brain glucose metabolism is highly heterogeneous among brain regions and continues postmortem. Therefore, challenges remain to capture an accurate snapshot of the physiological brain metabolome in healthy and diseased rodent models. To overcome this barrier, we employ a high-power focused microwave for the simultaneous euthanasia and fixation of mouse brain tissue to preserve metabolite pools prior to surgical removal and dissection of brain regions. We demonstrate exhaustion of glycogen and glucose and increase in lactate production during conventional rapid brain resection prior to preservation by liquid nitrogen that is not observed with microwave fixation. Next, microwave fixation was employed to define the impact of brain glucose metabolism in the mouse model of streptozotocin-induced type 1 diabetes. Using both total pool and isotope tracing analyses, we identified global glucose hypometabolism in multiple regions of the mouse brain, evidenced by reduced 13C enrichment into glycogen, glycolysis, and the TCA cycle. Reduced glucose metabolism correlated with a marked decrease in GLUT2 expression and several metabolic enzymes in unique brain regions. In conclusion, our study supports the incorporation of microwave fixation to study terminal brain metabolism in rodent models.
- organism: mouse
- assay: bulk RNA-seq
- assay: metabolomics
- research focus: metabolism & bioenergetics
- research focus: cell type annotation
- research focus: differential expression
- approach: experimental assay
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Increased fatty acid metabolism and decreased glycolysis are hallmarks of metabolic reprogramming in the brain during recovery from experimental stroke
Sanna H. Loppi, Marco A. Tavera-Garcia, … Kristian P. Doyle·bioRxiv·Mar 22, 2022
- 2-deoxy-D-glucose chemical exchange-sensitive spin-lock MRI of cerebral glucose metabolism after stroke in the rat
Philipp Boehm‐Sturm, Patrick Schuenke, … Philipp Mergenthaler·Journal of Cerebral Blood Flow & MetabolismPeer-reviewed·Jul 8, 2025
- Metabolic modelling and time-resolved mapping of glucose oxidative metabolism in rats brain by indirect deuterium detection with 1H-FID-MRSI at 9.4T
Alessio Siviglia, Gianna Nossa, … Bernard Lanz·Magnetic Resonance Materials in Physics Biology and MedicinePeer-reviewed·May 27, 2026
- Synchronous nonmonotonic changes in functional connectivity and white matter integrity in a rat model of sporadic Alzheimer's disease
Catarina Tristão‐Pereira, Yujian Diao, … Ileana Jelescu·bioRxiv·Jan 30, 2020
- GLUT1 ablation in astrocytes paradoxically improves central and peripheral glucose metabolism via enhanced insulin-stimulated ATP release
Carlos G. Ardanaz, Aida de la Cruz, … Maite Solas·bioRxiv·Oct 6, 2022
- Metabolic changes in brain slices over time: a multiplatform metabolomics approach
Carolina González-Riaño, Silvia Tapia‐González, … Coral Barbas·Molecular NeurobiologyPeer-reviewed·Mar 2, 2021