bioRxivBioinformaticsPreprint
grID: A CRISPR-Cas9 guide RNA Database and Resource for Genome-Editing
Abstract
CRISPR-Cas9 genome-editing is a revolutionary technology that is transforming biological research. The explosive growth and advances in CRISPR research over the last few years, coupled with the potential for clinical applications and therapeutics, is heralding a new era for genome engineering. To further support this technology platform and to provide a universal CRISPR annotation system, we introduce the grID database (http://crispr.technology), an extensive compilation of gRNA properties including sequence and variations, thermodynamic parameters, off-target analyses, and alternative PAM sites, among others. To aid in the design of optimal gRNAs, the website is integrated with other prominent databases, providing a wealth of additional resources to guide users from in silico analysis through experimental CRISPR targeting. Here, we make available all the tools, protocols, and plasmids that are needed for successful CRISPR-based genome targeting.
- Citations
- 14
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- mtgRNA-db: An annotated database of multi-target CRISPR-Cas9 guide-RNAs in the human genome
Aram Sandaldjian Modrek, Khoi Huynh, … Erik P. Sulman·bioRxiv·May 7, 2025
- dbGuide: A database of functionally validated guide RNAs for genome editing in human and mouse cells
Alexander A Gooden, Christine N. Evans, … Raj Chari·Nucleic Acids ResearchPeer-reviewed·Sep 22, 2020
- GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Ravin Poudel, Lidimarie Trujillo Rodríguez, … Adam R. Rivers·GigaSciencePeer-reviewed·Jan 1, 2022
- The crisprVerse: a comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies
Luke Hoberecht, Pirunthan Perampalam, … Jean‐Philippe Fortin·Nature CommunicationsPeer-reviewed·Nov 2, 2022
- WU-CRISPR: characteristics of functional guide RNAs for the CRISPR/Cas9 system
Nathan Wong, Weijun Liu, Xiaowei Wang·Genome BiologyPeer-reviewed·Nov 2, 2015
- Crackling Cloud: an event-driven, cloud-based CRISPR-Cas9 guide RNA design tool
Jacob Bradford, Divya Joy, … Dimitri Perrin·bioRxiv·Dec 4, 2024