Author

Lidimarie Trujillo Rodríguez

University of FloridaORCID 0000-0002-7611-6689Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:bacteria (other)· 2 Research Focus:benchmarking· 2 Assay:CRISPR screen· 2 Research Focus:database / resource· 2 Organism:E. coli· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Christopher R. ReischiD· 4 shared A. Murat EreniD· 1 shared Adam J. EllingtoniD· 1 shared Adam R. RiversiD· 1 shared Alex A. Javanpour· 1 shared Andrew D. HansoniD· 1 shared Catalina Mejia· 1 shared Chang C. LiuiD· 1 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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4 shared papersSynthetic Biology

Christopher R. ReischORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Digital Microbe: A Genome-Informed Data Integration Framework for Collaborative Research on Emerging Model Organisms

Iva Veseli, Michelle A. DeMers, Zachary S. Cooper, Matthew S. Schechter, Samuel E. Miller, Laura Weber, Christa B. Smith, Lidimarie Trujillo Rodríguez, William F. Schroer, Matthew R. McIlvin, Paloma Lopez, Makoto Saito, Sonya T. Dyhrman, A. Murat Eren, Mary Ann Moran, Rogier Braakman

The paper introduces Digital Microbes, an integrative framework for collaborative research on microbes, demonstrating its application with two case studies involving genomic and transcriptomic data.

bioRxiv · Jan 16, 2024 · PreprintBioinformatics

Characterizing constitutive promoters across the Proteobacteria

Layla A. Schuster, Catalina Mejia, Lidimarie Trujillo Rodríguez, Emily Kairalla, Christopher R. Reisch, Marc G. Chevrette, Raquel Dias

The paper identifies and characterizes constitutive promoters across three Proteobacteria classes, showing their expression range and portability between hosts.

bioRxiv · Nov 2, 2023 · PreprintSynthetic Biology

Broad-host-range mutagenesis with CRISPR-associated transposase

Lidimarie Trujillo Rodríguez, Adam J. Ellington, Christopher R. Reisch

This paper introduces a broad-host-range CRISPR-associated transposase (CasTn) system for efficient targeted mutagenesis and transposon insertion in Proteobacteria.

bioRxiv · Jan 19, 2022 · PreprintSynthetic Biology

GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

Ravin Poudel, Lidimarie Trujillo Rodríguez, Christopher R. Reisch, Adam R. Rivers

GuideMaker designs CRISPR-Cas guide RNA pools for non-model genomes and non-standard Cas enzymes, enabling rapid genome-wide screening.

GigaScience · Jan 1, 2022Peer-reviewedBioinformatics

Potential For Applying Continuous Directed Evolution To Plant Enzymes

Jorge D. García-García, Jaya Joshi, Jenelle A. Patterson, Lidimarie Trujillo Rodríguez, Christopher R. Reisch, Alex A. Javanpour, Chang C. Liu, Andrew D. Hanson

The paper discusses two systems for continuous directed evolution of enzymes and tests their adaptation for plant enzyme engineering.

bioRxiv · Aug 26, 2020 · PreprintSynthetic Biology