bioRxivGenomicsPreprint
Germline and somatic genetic effects on gene expression and outcome in patients with Multiple Myeloma
Heini M. NatriiD, Linh T. BuiiD, Lance M. PeteriD, Bianca Argente, Arnold Federico, Austin J. GutierreziD, Mei-I Chung, Jonathan J. KeatsiD, Nicholas E. BanovichiD
Abstract
Multiple Myeloma (MM) is a hematological malignancy associated with poor prognosis and relapses. MM has a strong inherited component, and while the mutational and transcriptomic landscapes of MM have been characterized extensively, the molecular consequences of germline genetic variation in MM have not been previously explored. Here, we have leveraged matched genotype and expression data from 607 patients to map the germline and somatic regulatory variation in MM. We find that non-coding variation shapes the transcriptional landscape of MM, contributing to overall survival. These regulatory variants alter the binding of transcription factors with known importance in MM, such as IRF4, providing insights into the underlying mechanisms. These data contribute to the increasing understanding of the genetic, molecular, and cellular forces shaping MM risk and outcomes.
- organism: human
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- research focus: GWAS / association mapping
- approach: statistical model
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Germline regulation of tumor evolutionary dynamics shapes multiple myeloma progression
Hai Chen, Jingmin Shu, … Li Liu·bioRxiv·Jun 7, 2026
- Genomic Basis of Multiple Myeloma Subtypes from the MMRF CoMMpass Study
Sheri Skerget, Daniel Peñaherrera, … Jonathan J. Keats·medRxiv·Aug 2, 2021
- Genetic program activity delineates risk, relapse, and therapy responsiveness in Multiple Myeloma
Matthew A. Wall, Serdar Turkarslan, … Nitin S. Baliga·npj Precision OncologyPeer-reviewed·Jun 28, 2021
- Over-accessible chromatin links myeloma initiating genetic events to oncogenic transcriptomes and aberrant transcription factor regulatory networks
J. Alvarez-Benayas, A. Katsarou, … A. Karadimitris·bioRxiv·Jun 11, 2020
- Integrative multi-omics identifies high risk Multiple Myeloma segment associated with significant DNA loss and dysregulated DNA repair and cell cycle pathways
M. Ortiz Estevez, M. Samur, … A. Thakurta·bioRxiv·Sep 3, 2021
- Methylation variability and LINE-1 activation in multiple myeloma
Qianhui Wan, Amy Leung, … Dustin E. Schones·bioRxiv·Jul 22, 2025