BioinformaticsSystems BiologyPeer-reviewed journal article
Simulating intervertebral disc cell behavior within 3D multifactorial environments
Laura BaumgartneriD, J.J. Reagh, Miguel Á. González BallesteriD, Jérôme NoaillyiD
Abstract
MotivationLow back pain is responsible for more global disability than any other condition. Its incidence is closely related to intervertebral disc (IVD) failure, which is likely caused by an accumulation of microtrauma within the IVD. Crucial factors in microtrauma development are not entirely known yet, probably because their exploration in vivo or in vitro remains tremendously challenging. In-silico modelling is, therefore, definitively appealing, and shall include approaches to integrate influences of multiple cell stimuli at the microscale. Accordingly, this study introduces a hybrid Agent-based (AB) model in IVD research and exploits network modelling solutions in systems biology to mimic the cellular behavior of Nucleus Pulposus cells exposed to a 3D multifactorial biochemical environment, based on mathematical integrations of existing experimental knowledge. Cellular activity reflected by mRNA expression of Aggrecan, Collagen type I, Collagen type II, MMP-3 and ADAMTS were calculated for inflamed and non-inflamed cells. mRNA expression over long periods of time is additionally determined including cell viability estimations. Model predictions were eventually validated with independent experimental data. ResultsAs it combines experimental data to simulate cell behavior exposed to a multifactorial environment, the present methodology was able to reproduce cell death within 3 days under glucose deprivation and a 50% decrease in cell viability after 7 days in an acidic environment. Cellular mRNA expression under non-inflamed conditions simulated a quantifiable catabolic shift under an adverse cell environment, and model predictions of mRNA expression of inflamed cells provide new explanation possibilities for unexpected results achieved in experimental research. Contactlaura.baumgartner@upf.edu
- Citations
- 18
- FWCI
- 1.31
- Field percentile
- top 20%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Understanding the physiological behaviour of disc cells in an in vitro imitation of the healthy and degenerated disc niche
Joseph Snuggs, Shaghayegh Basatvat, … Christine Lyn Le Maitre·bioRxiv·Dec 11, 2025
- A PDMS-based microfluidic platform enabling dual biochemical and electric-field stimulation for modeling sensory neuron-intervertebral disc crosstalk
Olanrewaju I Akande, Sade W. Clayton, … Cory J. Berkland·bioRxiv·Jul 30, 2026
- Parallel Networks to simulate complex multicellular dynamics - A proof of concept with intervertebral disc cell systems
Laura Baumgartner, Miguel Á. González Ballester, Jérôme Noailly·HeliyonPeer-reviewed·Jun 1, 2026
- MicroRNA-222 regulates fluid shear stress-induced human nucleus pulposus cells degeneration through affecting c-Fos expression
G. Miao, Y. Yao, … Yicun Yao , Baoqing Ye, Haixiong Miao·bioRxiv·Jan 18, 2019
- A Porcine Model of Intervertebral Disc Injury Recapitulates Human Discogenic Pain via Notochordal Cell Loss and Pain-inducing Nucleus Pulposus Cell Emergence
Giselle Kaneda, Jacob T. Wechsler, … Dmitriy Sheyn·JOR SpinePeer-reviewed·Jul 9, 2026
- Nucleus Pulposus Cell Network Modelling in the Intervertebral Disc
Sofia Tseranidou, Maria Segarra-Queralt, … Jérôme Noailly·npj Systems Biology and ApplicationsPeer-reviewed·Jan 31, 2025